WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50B6.11.1 Sequence Name  C50B6.11.1
Length (nt)  1101   Chromosome Location  V: 13340240-13343040
Chromosome . Primary Identifier  V Chromosome Location . Start  13340240
Chromosome Location . End  13343040 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50B6.11.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008223 lgc-48 C50B6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50B6.11 C50B6.11 1101   V: 13340240-13340381

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50B6.11.1 13340240 13343040 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204170   142   V: 13340240-13340381 Caenorhabditis elegans
Exon204171   124   V: 13340807-13340930 Caenorhabditis elegans
Exon204172   60   V: 13341258-13341317 Caenorhabditis elegans
Exon204173   115   V: 13341373-13341487 Caenorhabditis elegans
Exon204174   83   V: 13341541-13341623 Caenorhabditis elegans
Exon204175   73   V: 13341803-13341875 Caenorhabditis elegans
Exon204176   54   V: 13341918-13341971 Caenorhabditis elegans
Exon204177   113   V: 13342196-13342308 Caenorhabditis elegans
Exon204178   137   V: 13342357-13342493 Caenorhabditis elegans
Exon204179   161   V: 13342544-13342704 Caenorhabditis elegans
Exon204180   39   V: 13343002-13343040 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50B6.11.1 13340240 13343040 1

1 Sequence

Length
1101

1 Sequence Ontology Term

Identifier Name Description
transcript