WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T10G3.5b.1 Sequence Name  T10G3.5b.1
Length (nt)  3617   Chromosome Location  V: 13491365-13497372
Chromosome . Primary Identifier  V Chromosome Location . Start  13491365
Chromosome Location . End  13497372 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T10G3.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011696 eea-1 T10G3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T10G3.5b T10G3.5b 3612   V: 13491365-13491586

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T10G3.5b.1 13491365 13497372 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204616   222   V: 13491365-13491586 Caenorhabditis elegans
Exon204618   176   V: 13491978-13492153 Caenorhabditis elegans
Exon204620   274   V: 13492202-13492475 Caenorhabditis elegans
Exon204622   264   V: 13492791-13493054 Caenorhabditis elegans
Exon204624   228   V: 13493102-13493329 Caenorhabditis elegans
Exon204626   330   V: 13493375-13493704 Caenorhabditis elegans
Exon204628   888   V: 13494725-13495612 Caenorhabditis elegans
Exon204630   75   V: 13495941-13496015 Caenorhabditis elegans
Exon204631   936   V: 13496110-13497045 Caenorhabditis elegans
Exon204634   174   V: 13497093-13497266 Caenorhabditis elegans
Exon204636   50   V: 13497323-13497372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T10G3.5b.1 13491365 13497372 -1

1 Sequence

Length
3617

1 Sequence Ontology Term

Identifier Name Description
transcript