WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22G5.5a.1 Sequence Name  T22G5.5a.1
Length (nt)  1928   Chromosome Location  V: 13893403-13896415
Chromosome . Primary Identifier  V Chromosome Location . Start  13893403
Chromosome Location . End  13896415 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22G5.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011932 sptl-3 T22G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22G5.5a T22G5.5a 1539   V: 13893413-13893453

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22G5.5a.1 13893403 13896415 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon205729   51   V: 13893403-13893453 Caenorhabditis elegans
Exon205730   187   V: 13893500-13893686 Caenorhabditis elegans
Exon205732   155   V: 13893864-13894018 Caenorhabditis elegans
Exon205734   146   V: 13894348-13894493 Caenorhabditis elegans
Exon205736   325   V: 13894579-13894903 Caenorhabditis elegans
Exon205738   220   V: 13894948-13895167 Caenorhabditis elegans
Exon205740   96   V: 13895347-13895442 Caenorhabditis elegans
Exon205742   167   V: 13895562-13895728 Caenorhabditis elegans
Exon205744   130   V: 13895788-13895917 Caenorhabditis elegans
Exon205747   451   V: 13895965-13896415 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22G5.5a.1 13893403 13896415 1

1 Sequence

Length
1928

1 Sequence Ontology Term

Identifier Name Description
transcript