WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T22G5.5a Sequence Name  T22G5.5a
Length (nt)  1539   Chromosome Location  V: 13893413-13893453
Chromosome . Primary Identifier  V Chromosome Location . Start  13893413
Chromosome Location . End  13893453
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22G5.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31996 SPTL-3, isoform a 56.3 512 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00053858
WBRNAi00001705
WBRNAi00019043
WBRNAi00035826

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T22G5.5a 13893413 13893453 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011932 sptl-3 T22G5.5 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:T22G5.5a 13893413 13893453 1
CDS:T22G5.5a 13893500 13893686 1
CDS:T22G5.5a 13893864 13894018 1
CDS:T22G5.5a 13894348 13894493 1
CDS:T22G5.5a 13894579 13894903 1
CDS:T22G5.5a 13894948 13895167 1
CDS:T22G5.5a 13895347 13895442 1
CDS:T22G5.5a 13895562 13895728 1
CDS:T22G5.5a 13895788 13895917 1
CDS:T22G5.5a 13895965 13896036 1

1 Sequence

Length
1539

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T22G5.5a.1 T22G5.5a.1 1928   V: 13893403-13896415