WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00304182 Gene Name  K02E11.15
Sequence Name  ? K02E11.15 Organism  Caenorhabditis elegans
Automated Description  Enriched in germ line; interfacial epithelial cell; and ut4 based on single-cell RNA-seq studies. Is affected by cua-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  V:± Length (nt)  ? 167
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00304182

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K02E11.15 K02E11.15 167   V: 14237609-14237775
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00049397
WBRNAi00014584
WBRNAi00005524

9 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
gk962947
tm10753
gk253247
gk875362

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00304182 14237609 14237775 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_14237776..14239522   1747 V: 14237776-14239522 Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in N2 day 3 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day3_vs_Day1_downregulated_Illumina
  Transcripts that showed significantly decreased expression in N2 day 4 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day4_vs_Day1_downregulated_Illumina
  Transcripts that showed significantly decreased expression in N2 day 5 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day5_vs_Day1_downregulated_Illumina
  Transcripts that showed significantly decreased expression in N2 day 7 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day7_vs_Day1_downregulated_Illumina
  Transcripts that showed significantly increased expression in N2 day 15 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day15_vs_Day1_upregulated_Illumina
  Single-cell RNA-Seq cell group 30_5 expressed in glia. scVI 0.6.0 WBPaper00065841:30_5
  Transcripts that showed significantly decreased expression in cua-1(knu790) comparing to in N2. FDR < 0.05 and fold change > 2. WBPaper00066160:cua-1(knu790)_downregulated
  Single-cell RNA-Seq cell group 57_1 expressed in germline. scVI 0.6.0 WBPaper00065841:57_1
  Single-cell RNA-Seq cell group 13_1 expressed in epithelium. scVI 0.6.0 WBPaper00065841:13_1
  Single-cell RNA-Seq cell group 13_0 with unidentified tissue expression pattern. scVI 0.6.0 WBPaper00065841:13_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00304182 14237609 14237775 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
167

1 Sequence Ontology Term