WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40H4A.1a.1 Sequence Name  Y40H4A.1a.1
Length (nt)  2152   Chromosome Location  V: 14564819-14579719
Chromosome . Primary Identifier  V Chromosome Location . Start  14564819
Chromosome Location . End  14579719 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40H4A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001519 gar-3 Y40H4A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40H4A.1a Y40H4A.1a 1758   V: 14565068-14565155

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40H4A.1a.1 14564819 14579719 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon207628   337   V: 14564819-14565155 Caenorhabditis elegans
Exon207631   124   V: 14565506-14565629 Caenorhabditis elegans
Exon207635   245   V: 14565678-14565922 Caenorhabditis elegans
Exon207639   179   V: 14566638-14566816 Caenorhabditis elegans
Exon207643   312   V: 14566903-14567214 Caenorhabditis elegans
Exon207648   467   V: 14567984-14568450 Caenorhabditis elegans
Exon207652   88   V: 14568778-14568865 Caenorhabditis elegans
Exon207656   180   V: 14568924-14569103 Caenorhabditis elegans
Exon207661   94   V: 14569901-14569994 Caenorhabditis elegans
Exon207665   65   V: 14579013-14579077 Caenorhabditis elegans
Exon207667   61   V: 14579659-14579719 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40H4A.1a.1 14564819 14579719 -1

1 Sequence

Length
2152

1 Sequence Ontology Term

Identifier Name Description
transcript