WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y40H4A.1a Sequence Name  Y40H4A.1a
Length (nt)  1758   Chromosome Location  V: 14565068-14565155
Chromosome . Primary Identifier  V Chromosome Location . Start  14565068
Chromosome Location . End  14565155
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40H4A.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27783 GAR-3, isoform a 66.5 585 Caenorhabditis elegans
 

Other

6 RNAi

WormBase ID
WBRNAi00056336
WBRNAi00012332
WBRNAi00020457
WBRNAi00027900
WBRNAi00092909
WBRNAi00108394

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y40H4A.1a 14565068 14565155 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001519 gar-3 Y40H4A.1 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y40H4A.1a 14565068 14565155 -1
CDS:Y40H4A.1a 14565506 14565629 -1
CDS:Y40H4A.1a 14565678 14565922 -1
CDS:Y40H4A.1a 14566638 14566816 -1
CDS:Y40H4A.1a 14566903 14567214 -1
CDS:Y40H4A.1a 14567984 14568450 -1
CDS:Y40H4A.1a 14568778 14568865 -1
CDS:Y40H4A.1a 14568924 14569103 -1
CDS:Y40H4A.1a 14569901 14569975 -1

1 Sequence

Length
1758

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y40H4A.1a.1 Y40H4A.1a.1 2152   V: 14564819-14579719
Transcript:Y40H4A.1a.3 Y40H4A.1a.3 2093   V: 14564819-14579079
Transcript:Y40H4A.1a.2 Y40H4A.1a.2 2025   V: 14564820-14569994