WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47E8.8a.1 Sequence Name  C47E8.8a.1
Length (nt)  4817   Chromosome Location  V: 14698966-14707601
Chromosome . Primary Identifier  V Chromosome Location . Start  14698966
Chromosome Location . End  14707601 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47E8.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008145 set-5 C47E8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47E8.8a C47E8.8a 4677   V: 14698970-14699536

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8a.1 14698966 14707601 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon207929   571   V: 14698966-14699536 Caenorhabditis elegans
Exon207931   347   V: 14700109-14700455 Caenorhabditis elegans
Exon207935   165   V: 14700696-14700860 Caenorhabditis elegans
Exon207939   105   V: 14700906-14701010 Caenorhabditis elegans
Exon207943   327   V: 14701315-14701641 Caenorhabditis elegans
Exon207947   105   V: 14701836-14701940 Caenorhabditis elegans
Exon207951   1533   V: 14702148-14703680 Caenorhabditis elegans
Exon207955   114   V: 14703730-14703843 Caenorhabditis elegans
Exon207959   204   V: 14703981-14704184 Caenorhabditis elegans
Exon207963   102   V: 14704580-14704681 Caenorhabditis elegans
Exon207967   117   V: 14704796-14704912 Caenorhabditis elegans
Exon207971   120   V: 14704993-14705112 Caenorhabditis elegans
Exon207975   117   V: 14705376-14705492 Caenorhabditis elegans
Exon207979   114   V: 14705818-14705931 Caenorhabditis elegans
Exon207982   207   V: 14706114-14706320 Caenorhabditis elegans
Exon207986   160   V: 14706605-14706764 Caenorhabditis elegans
Exon207990   213   V: 14706995-14707207 Caenorhabditis elegans
Exon207997   196   V: 14707406-14707601 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8a.1 14698966 14707601 1

1 Sequence

Length
4817

1 Sequence Ontology Term

Identifier Name Description
transcript