WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014263 Gene Name  C18D4.t1
Sequence Name  ? C18D4.t1 Organism  Caenorhabditis elegans
Biotype  SO:0001272 Genetic Position 
Length (nt)  ? 84
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014263

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C18D4.t1 C18D4.t1 73   V: 17542446-17542529
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00082679
WBRNAi00082414
WBRNAi00012082

35 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
gk963587
WBVar02124059
gk962704
gk962630
WBVar02122699
WBVar02121656
WBVar02124636
WBVar02123716
WBVar02124838
gk962558
WBVar02123305
WBVar02124272
WBVar02122866
WBVar02121657
WBVar02122700
WBVar02122259
WBVar02124375
WBVar02079469
WBVar02124637
WBVar01595626
gk374267
gk589557
gk669718
gk422290

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014263 17542446 17542529 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17542273..17542445   173 V: 17542273-17542445 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Fungi infection: Fusarium oxysporum Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. WBPaper00053368:F.oxysporum_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014263 17542446 17542529 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
84

1 Sequence Ontology Term