WormMine: Gene WBGene00005200

• WormBase Gene ID: WBGene00005200
• Gene Name: srg-43
• Sequence Name: C38D9.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by etr-1 and ogt-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :12.9186 ±4.3e-05
• Length (nt): 1906

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005200

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

57 Allele

• gk963271
• gk963489
• gk963304
• gk963637
• WBVar02123303
• gk964050
• WBVar02124059
• gk962704
• gk962630
• WBVar02122699
• WBVar02121656
• WBVar02124636
• WBVar02123716
• gk962558
• WBVar02124375
• WBVar02079469
• tm11472
• WBVar01653595
• WBVar02100386
• gk667297
• gk501200
• WBVar02032541
• gk372242
• gk674089
• gk594658
• gk353421
• gk934849
• gk865028
• gk488328
• gk402644

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005200
• Start: 17553870
• End: 17555775
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_17555776..17555853
• Length (nt): 78
• Chromosome Location: V: 17555776-17555853
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-2(e1370)_upregulated_neuron
	Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-16(mu86)_upregulated_neuron
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
Fungi infection: Fusarium oxysporum	Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours.	The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed.	WBPaper00053368:F.oxysporum_regulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005200
• Start: 17553870
• End: 17555775
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1906

1 Sequence Ontology Term