WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47A10.1.1 Sequence Name  C47A10.1.1
Length (nt)  3991   Chromosome Location  V: 17755892-17764751
Chromosome . Primary Identifier  V Chromosome Location . Start  17755892
Chromosome Location . End  17764751 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47A10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004003 pgp-9 C47A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47A10.1 C47A10.1 3885   V: 17755897-17755940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47A10.1.1 17755892 17764751 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon214620   49   V: 17755892-17755940 Caenorhabditis elegans
Exon214621   157   V: 17755990-17756146 Caenorhabditis elegans
Exon214622   168   V: 17756212-17756379 Caenorhabditis elegans
Exon214624   134   V: 17757178-17757311 Caenorhabditis elegans
Exon214625   1022   V: 17758019-17759040 Caenorhabditis elegans
Exon214626   422   V: 17760066-17760487 Caenorhabditis elegans
Exon214627   530   V: 17760537-17761066 Caenorhabditis elegans
Exon214628   790   V: 17761488-17762277 Caenorhabditis elegans
Exon214629   207   V: 17762343-17762549 Caenorhabditis elegans
Exon214630   274   V: 17764196-17764469 Caenorhabditis elegans
Exon214631   238   V: 17764514-17764751 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47A10.1.1 17755892 17764751 1

1 Sequence

Length
3991

1 Sequence Ontology Term

Identifier Name Description
transcript