WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E01B7.1.1 Sequence Name  E01B7.1.1
Length (nt)  2627   Chromosome Location  V: 17924985-17934218
Chromosome . Primary Identifier  V Chromosome Location . Start  17924985
Chromosome Location . End  17934218 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E01B7.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008441 usp-50 E01B7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E01B7.1 E01B7.1 2436   V: 17925013-17925116

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:E01B7.1.1 17924985 17934218 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon214813   132   V: 17924985-17925116 Caenorhabditis elegans
Exon214814   145   V: 17925380-17925524 Caenorhabditis elegans
Exon214816   81   V: 17925967-17926047 Caenorhabditis elegans
Exon214818   191   V: 17926572-17926762 Caenorhabditis elegans
Exon214820   84   V: 17927121-17927204 Caenorhabditis elegans
Exon214822   172   V: 17927256-17927427 Caenorhabditis elegans
Exon214824   447   V: 17928050-17928496 Caenorhabditis elegans
Exon214826   98   V: 17928556-17928653 Caenorhabditis elegans
Exon214828   160   V: 17929621-17929780 Caenorhabditis elegans
Exon214830   174   V: 17930087-17930260 Caenorhabditis elegans
Exon214833   108   V: 17930552-17930659 Caenorhabditis elegans
Exon214837   120   V: 17931205-17931324 Caenorhabditis elegans
Exon214839   144   V: 17931398-17931541 Caenorhabditis elegans
Exon214842   96   V: 17932188-17932283 Caenorhabditis elegans
Exon214844   153   V: 17932450-17932602 Caenorhabditis elegans
Exon214848   120   V: 17933506-17933625 Caenorhabditis elegans
Exon214850   202   V: 17934017-17934218 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:E01B7.1.1 17924985 17934218 1

1 Sequence

Length
2627

1 Sequence Ontology Term

Identifier Name Description
transcript