WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51A2D.19c.1 Sequence Name  Y51A2D.19c.1
Length (nt)  3719   Chromosome Location  V: 18492261-18508212
Chromosome . Primary Identifier  V Chromosome Location . Start  18492261
Chromosome Location . End  18508212 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51A2D.19c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004830 slo-1 Y51A2D.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51A2D.19c Y51A2D.19c 3396   V: 18492306-18492460

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19c.1 18492261 18508212 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon215785   200   V: 18492261-18492460 Caenorhabditis elegans
Exon215799   211   V: 18493131-18493341 Caenorhabditis elegans
Exon215813   119   V: 18495017-18495135 Caenorhabditis elegans
Exon215826   103   V: 18495292-18495394 Caenorhabditis elegans
Exon215839   112   V: 18495556-18495667 Caenorhabditis elegans
Exon215852   323   V: 18495990-18496312 Caenorhabditis elegans
Exon215865   309   V: 18497242-18497550 Caenorhabditis elegans
Exon215878   309   V: 18498535-18498843 Caenorhabditis elegans
Exon215889   113   V: 18499582-18499694 Caenorhabditis elegans
Exon215904   236   V: 18501000-18501235 Caenorhabditis elegans
Exon215917   45   V: 18501935-18501979 Caenorhabditis elegans
Exon215932   39   V: 18502068-18502106 Caenorhabditis elegans
Exon215939   103   V: 18502793-18502895 Caenorhabditis elegans
Exon215959   85   V: 18504147-18504231 Caenorhabditis elegans
Exon215972   300   V: 18504832-18505131 Caenorhabditis elegans
Exon215985   283   V: 18505872-18506154 Caenorhabditis elegans
Exon215998   131   V: 18506376-18506506 Caenorhabditis elegans
Exon216011   195   V: 18506886-18507080 Caenorhabditis elegans
Exon216024   162   V: 18507569-18507730 Caenorhabditis elegans
Exon216046   341   V: 18507872-18508212 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19c.1 18492261 18508212 1

1 Sequence

Length
3719

1 Sequence Ontology Term

Identifier Name Description
transcript