WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39B6A.43a.1 Sequence Name  Y39B6A.43a.1
Length (nt)  2348   Chromosome Location  V: 18960964-18967823
Chromosome . Primary Identifier  V Chromosome Location . Start  18960964
Chromosome Location . End  18967823 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39B6A.43a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012701 Y39B6A.43 Y39B6A.43 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39B6A.43a Y39B6A.43a 2175   V: 18961101-18961416

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39B6A.43a.1 18960964 18967823 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon216963   453   V: 18960964-18961416 Caenorhabditis elegans
Exon216966   198   V: 18961551-18961748 Caenorhabditis elegans
Exon216969   306   V: 18963637-18963942 Caenorhabditis elegans
Exon216972   137   V: 18964000-18964136 Caenorhabditis elegans
Exon216975   144   V: 18964297-18964440 Caenorhabditis elegans
Exon216978   185   V: 18964911-18965095 Caenorhabditis elegans
Exon216981   150   V: 18965480-18965629 Caenorhabditis elegans
Exon216984   165   V: 18966282-18966446 Caenorhabditis elegans
Exon216988   349   V: 18966505-18966853 Caenorhabditis elegans
Exon216990   113   V: 18967507-18967619 Caenorhabditis elegans
Exon216992   148   V: 18967676-18967823 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39B6A.43a.1 18960964 18967823 -1

1 Sequence

Length
2348

1 Sequence Ontology Term

Identifier Name Description
transcript