Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C25F9.18 | C25F9.18 |
114
 |
V: 19420701-19420857 |
Other
40 Allele
| Public Name |
|---|
| gk963271 |
| gk962705 |
| gk963489 |
| gk963304 |
| WBVar02124642 |
| gk963809 |
| gk963637 |
| WBVar00091261 |
| WBVar02124842 |
| WBVar02121326 |
| WBVar02121908 |
| WBVar02124282 |
| WBVar02122044 |
| WBVar02122876 |
| WBVar02121484 |
| WBVar02122706 |
| WBVar02120531 |
| WBVar02123481 |
| WBVar02122402 |
| WBVar00091149 |
| WBVar02079473 |
| WBVar02075294 |
| WBVar02074902 |
| WBVar02074901 |
| WBVar02075408 |
| WBVar02076677 |
| WBVar02076227 |
| WBVar02076226 |
| WBVar02077505 |
| WBVar02076974 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00219562 | 19420701 | 19420857 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_19419435..19420700 | 1266 | V: 19419435-19420700 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals. | DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. | WBPaper00060014:set-2(zr2012)_upregulated | |
| Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron | |
| Transcripts that showed significantly increased expression in N2 animals exposed to 30 uM CdCl2 for five days starting from L4. | edgeR, fold change > 2, p < 0.05. | WBPaper00066204:CdCl2_upregulated_mRNA | |
| Fungi infection: Fusarium oxysporum | Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. | The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. | WBPaper00053368:F.oxysporum_regulated |