WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y60A3A.12.1 Sequence Name  Y60A3A.12.1
Length (nt)  2532   Chromosome Location  V: 19908086-19916023
Chromosome . Primary Identifier  V Chromosome Location . Start  19908086
Chromosome Location . End  19916023 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y60A3A.12.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000499 chk-2 Y60A3A.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y60A3A.12 Y60A3A.12 1431   V: 19909137-19909148

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y60A3A.12.1 19908086 19916023 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218723   1063   V: 19908086-19909148 Caenorhabditis elegans
Exon218725   159   V: 19909844-19910002 Caenorhabditis elegans
Exon218726   80   V: 19910588-19910667 Caenorhabditis elegans
Exon218727   98   V: 19910909-19911006 Caenorhabditis elegans
Exon218728   125   V: 19913755-19913879 Caenorhabditis elegans
Exon218729   87   V: 19913957-19914043 Caenorhabditis elegans
Exon218730   57   V: 19914093-19914149 Caenorhabditis elegans
Exon218731   120   V: 19914203-19914322 Caenorhabditis elegans
Exon218732   108   V: 19914674-19914781 Caenorhabditis elegans
Exon218733   137   V: 19915131-19915267 Caenorhabditis elegans
Exon218734   139   V: 19915374-19915512 Caenorhabditis elegans
Exon218735   131   V: 19915556-19915686 Caenorhabditis elegans
Exon218736   137   V: 19915743-19915879 Caenorhabditis elegans
Exon218737   91   V: 19915933-19916023 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y60A3A.12.1 19908086 19916023 -1

1 Sequence

Length
2532

1 Sequence Ontology Term

Identifier Name Description
transcript