WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y113G7A.4a.1 Sequence Name  Y113G7A.4a.1
Length (nt)  2821   Chromosome Location  V: 20105633-20120673
Chromosome . Primary Identifier  V Chromosome Location . Start  20105633
Chromosome Location . End  20120673 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y113G7A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003566 ncx-1 Y113G7A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7A.4a Y113G7A.4a 2643   V: 20105794-20106016

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.4a.1 20105633 20120673 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon219047   384   V: 20105633-20106016 Caenorhabditis elegans
Exon219049   157   V: 20108305-20108461 Caenorhabditis elegans
Exon219051   147   V: 20109280-20109426 Caenorhabditis elegans
Exon219053   283   V: 20110428-20110710 Caenorhabditis elegans
Exon219055   106   V: 20111396-20111501 Caenorhabditis elegans
Exon219057   366   V: 20112220-20112585 Caenorhabditis elegans
Exon219059   81   V: 20113771-20113851 Caenorhabditis elegans
Exon219061   153   V: 20113970-20114122 Caenorhabditis elegans
Exon219063   226   V: 20115837-20116062 Caenorhabditis elegans
Exon219065   128   V: 20117107-20117234 Caenorhabditis elegans
Exon219067   221   V: 20118031-20118251 Caenorhabditis elegans
Exon219069   213   V: 20118648-20118860 Caenorhabditis elegans
Exon219071   153   V: 20119654-20119806 Caenorhabditis elegans
Exon219074   102   V: 20120243-20120344 Caenorhabditis elegans
Exon219077   101   V: 20120573-20120673 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.4a.1 20105633 20120673 -1

1 Sequence

Length
2821

1 Sequence Ontology Term

Identifier Name Description
transcript