WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y113G7A.4b.1 Sequence Name  Y113G7A.4b.1
Length (nt)  2622   Chromosome Location  V: 20105804-20120656
Chromosome . Primary Identifier  V Chromosome Location . Start  20105804
Chromosome Location . End  20120656 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y113G7A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003566 ncx-1 Y113G7A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7A.4b Y113G7A.4b 2622   V: 20105804-20106005

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.4b.1 20105804 20120656 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon219048   202   V: 20105804-20106005 Caenorhabditis elegans
Exon219050   157   V: 20108305-20108461 Caenorhabditis elegans
Exon219052   147   V: 20109280-20109426 Caenorhabditis elegans
Exon219054   283   V: 20110428-20110710 Caenorhabditis elegans
Exon219056   106   V: 20111396-20111501 Caenorhabditis elegans
Exon219058   366   V: 20112220-20112585 Caenorhabditis elegans
Exon219060   81   V: 20113771-20113851 Caenorhabditis elegans
Exon219062   153   V: 20113970-20114122 Caenorhabditis elegans
Exon219064   226   V: 20115837-20116062 Caenorhabditis elegans
Exon219066   128   V: 20117107-20117234 Caenorhabditis elegans
Exon219068   221   V: 20118031-20118251 Caenorhabditis elegans
Exon219070   213   V: 20118648-20118860 Caenorhabditis elegans
Exon219072   153   V: 20119654-20119806 Caenorhabditis elegans
Exon219075   102   V: 20120243-20120344 Caenorhabditis elegans
Exon219076   84   V: 20120573-20120656 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.4b.1 20105804 20120656 -1

1 Sequence

Length
2622

1 Sequence Ontology Term

Identifier Name Description
transcript