WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38H6C.20.1 Sequence Name  Y38H6C.20.1
Length (nt)  2301   Chromosome Location  V: 20547235-20551196
Chromosome . Primary Identifier  V Chromosome Location . Start  20547235
Chromosome Location . End  20551196 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38H6C.20.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012632 Y38H6C.20 Y38H6C.20 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38H6C.20 Y38H6C.20 2211   V: 20547293-20547439

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38H6C.20.1 20547235 20551196 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon219800   205   V: 20547235-20547439 Caenorhabditis elegans
Exon219801   127   V: 20547504-20547630 Caenorhabditis elegans
Exon219802   216   V: 20548070-20548285 Caenorhabditis elegans
Exon219803   245   V: 20548417-20548661 Caenorhabditis elegans
Exon219804   201   V: 20548763-20548963 Caenorhabditis elegans
Exon219805   65   V: 20549047-20549111 Caenorhabditis elegans
Exon219806   86   V: 20549161-20549246 Caenorhabditis elegans
Exon219807   169   V: 20549294-20549462 Caenorhabditis elegans
Exon219808   142   V: 20549708-20549849 Caenorhabditis elegans
Exon219809   110   V: 20549894-20550003 Caenorhabditis elegans
Exon219810   153   V: 20550054-20550206 Caenorhabditis elegans
Exon219811   121   V: 20550254-20550374 Caenorhabditis elegans
Exon219812   183   V: 20550516-20550698 Caenorhabditis elegans
Exon219813   278   V: 20550919-20551196 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38H6C.20.1 20547235 20551196 -1

1 Sequence

Length
2301

1 Sequence Ontology Term

Identifier Name Description
transcript