WormMine: Gene WBGene00235003

• WormBase Gene ID: WBGene00235003
• Gene Name: F26F2.15
• Sequence Name: F26F2.15
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by smg-2 and adr-1 based on RNA-seq studies. Is affected by rifampin; allantoin; and Sirolimus based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 2422

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00235003

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

92 Allele

• gk963271
• WBVar02124844
• gk964176
• gk962705
• gk963489
• gk963304
• WBVar02122714
• WBVar02124642
• gk963809
• WBVar01755778
• WBVar01755779
• WBVar01755780
• WBVar01755781
• WBVar01755782
• WBVar01755783
• WBVar01755784
• WBVar01755785
• WBVar01755786
• WBVar01755787
• WBVar01755788
• WBVar01755789
• WBVar01755790
• WBVar01755791
• WBVar01755792
• WBVar01755793
• WBVar02121339
• WBVar02124290
• WBVar02063418
• WBVar00073472
• WBVar00073471

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00235003
• Start: 20590604
• End: 20593025
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_20590340..20590603
• Length (nt): 264
• Chromosome Location: V: 20590340-20590603
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin-Allantoin_upregulated
	Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin_upregulated
	Transcripts that showed significantly increased expression after animals were treated with 100uM Rapamycin, 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
	Transcripts that showed significantly increased expression after animals were treated with 100uM Rapamycin and 50uM Rifampicin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rapamycin-Rifampicin_upregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2 at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066511:adr-1(tm668)_downregulated
	Transcripts that showed increased expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, and their mRNAs co-purify with SMG-2.	edgeR	WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00235003
• Start: 20590604
• End: 20593025
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2422

1 Sequence Ontology Term