WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  edgeR Description  Transcripts that showed increased expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, and their mRNAs co-purify with SMG-2.
Primary Identifier  WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
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0 Anatomy Terms

581 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000005 aat-4 T13A10.10 Caenorhabditis elegans
WBGene00000079 adr-1 H15N14.1 Caenorhabditis elegans
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000244 bbs-8 T25F10.5 Caenorhabditis elegans
WBGene00000442 ceh-19 F20D12.6 Caenorhabditis elegans
WBGene00000445 ceh-22 F29F11.5 Caenorhabditis elegans
WBGene00000492 che-13 F59C6.7 Caenorhabditis elegans
WBGene00000630 col-53 M01A12.1 Caenorhabditis elegans
WBGene00000632 col-55 T05E7.2 Caenorhabditis elegans
WBGene00000763 coq-3 Y57G11C.11 Caenorhabditis elegans
WBGene00000820 csp-2 Y73B6BL.7 Caenorhabditis elegans
WBGene00000841 cul-6 K08E7.7 Caenorhabditis elegans
WBGene00000876 cyl-1 C52E4.6 Caenorhabditis elegans
WBGene00001151 ech-2 F38H4.8 Caenorhabditis elegans
WBGene00001204 egl-38 C04G2.7 Caenorhabditis elegans
WBGene00001338 ears-2 T07A9.2 Caenorhabditis elegans
WBGene00001617 glr-6 F41B4.4 Caenorhabditis elegans
WBGene00001636 gly-11 Y75B8A.9 Caenorhabditis elegans
WBGene00001937 his-63 F22B3.2 Caenorhabditis elegans
WBGene00001947 his-73 W09H1.2 Caenorhabditis elegans
WBGene00002063 ife-5 Y57A10A.30 Caenorhabditis elegans
WBGene00002184 kel-1 C47D12.7 Caenorhabditis elegans
WBGene00002225 klp-15 M01E11.6 Caenorhabditis elegans
WBGene00002230 klp-20 Y50D7A.6 Caenorhabditis elegans
WBGene00002270 lec-7 R07B1.2 Caenorhabditis elegans
WBGene00003038 lin-56 ZK673.3 Caenorhabditis elegans
WBGene00003044 lir-1 F18A1.3 Caenorhabditis elegans
WBGene00003045 lir-2 F18A1.4 Caenorhabditis elegans
WBGene00003124 mai-1 K10B3.9 Caenorhabditis elegans
WBGene00003555 nas-39 F38E9.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004880 smg-2 Y48G8AL.6 Caenorhabditis elegans

0 Regulated By Molecule