WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T03D8.5b.1 Sequence Name  T03D8.5b.1
Length (nt)  3422   Chromosome Location  V: 20820148-20825028
Chromosome . Primary Identifier  V Chromosome Location . Start  20820148
Chromosome Location . End  20825028 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T03D8.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001547 gcy-22 T03D8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T03D8.5b T03D8.5b 3165   V: 20820405-20820482

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T03D8.5b.1 20820148 20825028 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220613   335   V: 20820148-20820482 Caenorhabditis elegans
Exon220616   95   V: 20820527-20820621 Caenorhabditis elegans
Exon220619   274   V: 20820675-20820948 Caenorhabditis elegans
Exon220622   193   V: 20821168-20821360 Caenorhabditis elegans
Exon220625   74   V: 20821406-20821479 Caenorhabditis elegans
Exon220628   456   V: 20821527-20821982 Caenorhabditis elegans
Exon220631   261   V: 20822040-20822300 Caenorhabditis elegans
Exon220634   262   V: 20822346-20822607 Caenorhabditis elegans
Exon220637   200   V: 20822655-20822854 Caenorhabditis elegans
Exon220640   146   V: 20822972-20823117 Caenorhabditis elegans
Exon220643   141   V: 20823166-20823306 Caenorhabditis elegans
Exon220646   171   V: 20823352-20823522 Caenorhabditis elegans
Exon220649   123   V: 20823567-20823689 Caenorhabditis elegans
Exon220652   233   V: 20823733-20823965 Caenorhabditis elegans
Exon220655   133   V: 20824017-20824149 Caenorhabditis elegans
Exon220658   107   V: 20824194-20824300 Caenorhabditis elegans
Exon220660   218   V: 20824811-20825028 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T03D8.5b.1 20820148 20825028 -1

1 Sequence

Length
3422

1 Sequence Ontology Term

Identifier Name Description
transcript