WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3e.1 Sequence Name  F25C8.3e.1
Length (nt)  9654   Chromosome Location  V: 20879854-20898909
Chromosome . Primary Identifier  V Chromosome Location . Start  20879854
Chromosome Location . End  20898909 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3e F25C8.3e 9483   V: 20879854-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3e.1 20879854 20898909 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220789   95   V: 20879854-20879948 Caenorhabditis elegans
Exon220796   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220801   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220806   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220811   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220816   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220821   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220826   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220831   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220836   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220841   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220846   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220851   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220856   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220861   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220866   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220871   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220880   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220887   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220892   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220900   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220905   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220912   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220917   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220922   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220927   756   V: 20894834-20895589 Caenorhabditis elegans
Exon220932   290   V: 20895674-20895963 Caenorhabditis elegans
Exon220937   682   V: 20896014-20896695 Caenorhabditis elegans
Exon220942   268   V: 20896753-20897020 Caenorhabditis elegans
Exon220947   293   V: 20897076-20897368 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3e.1 20879854 20898909 1

1 Sequence

Length
9654

1 Sequence Ontology Term

Identifier Name Description
transcript