WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3c.1 Sequence Name  F25C8.3c.1
Length (nt)  9588   Chromosome Location  V: 20879908-20898738
Chromosome . Primary Identifier  V Chromosome Location . Start  20879908
Chromosome Location . End  20898738 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3c F25C8.3c 9588   V: 20879908-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3c.1 20879908 20898738 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

35 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220845   41   V: 20879908-20879948 Caenorhabditis elegans
Exon220848   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220853   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220858   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220863   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220868   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220873   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220878   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220883   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220888   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220893   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220898   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220903   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220908   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220913   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220918   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220923   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220928   132   V: 20889840-20889971 Caenorhabditis elegans
Exon220932   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220939   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220944   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220948   27   V: 20891419-20891445 Caenorhabditis elegans
Exon220952   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220957   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220964   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220969   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220974   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220979   756   V: 20894834-20895589 Caenorhabditis elegans
Exon220984   290   V: 20895674-20895963 Caenorhabditis elegans
Exon220989   682   V: 20896014-20896695 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3c.1 20879908 20898738 1

1 Sequence

Length
9588

1 Sequence Ontology Term

Identifier Name Description
transcript