WormMine: Gene WBGene00235377

• WormBase Gene ID: WBGene00235377
• Gene Name: CE7X_3.4
• Sequence Name: CE7X_3.4
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by four chemicals including rifampin; Psoralens; and Sirolimus based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 1593

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00235377

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

10 Allele

• gk962800
• gk964321
• WBVar02123863
• gk963641
• gk962812
• WBVar01878026
• WBVar01901522
• WBVar02122405
• WBVar02121670
• WBVar01813595

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00235377
• Start: 13442
• End: 15034
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_15035..16540
• Length (nt): 1506
• Chromosome Location: X: 15035-16540
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin-Allantoin_downregulated
	Transcripts that showed significantly increased expression after animals were treated with 100uM Rapamycin, 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
	Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin-Psora_upregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_upregulated
	Genes with variation in expression level across genotypes (AB2, CB4856, RC301, CB4857, N2, HC445).	two-way ANOVA	WBPaper00041174:genotypic
	Genes with significant variation in expression level only across genotypes(AB2, CB4856, RC301, CB4857, N2, HC445), but not environments (control, 25C, High-pH-Salt, Liquid, infection).	two-way ANOVA	WBPaper00041174:genotypic_prime

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00235377
• Start: 13442
• End: 15034
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1593

1 Sequence Ontology Term