WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08D2.7.1 Sequence Name  T08D2.7.1
Length (nt)  1451   Chromosome Location  X: 182691-191193
Chromosome . Primary Identifier  X Chromosome Location . Start  182691
Chromosome Location . End  191193 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08D2.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011612 chkr-2 T08D2.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08D2.7 T08D2.7 1410   X: 182691-182731

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08D2.7.1 182691 191193 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221325   41   X: 182691-182731 Caenorhabditis elegans
Exon221326   134   X: 182785-182918 Caenorhabditis elegans
Exon221327   131   X: 182967-183097 Caenorhabditis elegans
Exon221328   139   X: 183153-183291 Caenorhabditis elegans
Exon221329   137   X: 183420-183556 Caenorhabditis elegans
Exon221330   108   X: 184184-184291 Caenorhabditis elegans
Exon221331   120   X: 184650-184769 Caenorhabditis elegans
Exon221332   57   X: 184833-184889 Caenorhabditis elegans
Exon221333   87   X: 184937-185023 Caenorhabditis elegans
Exon221334   125   X: 185100-185224 Caenorhabditis elegans
Exon221335   98   X: 187766-187863 Caenorhabditis elegans
Exon221336   80   X: 188120-188199 Caenorhabditis elegans
Exon221337   156   X: 190407-190562 Caenorhabditis elegans
Exon221338   38   X: 191156-191193 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08D2.7.1 182691 191193 1

1 Sequence

Length
1451

1 Sequence Ontology Term

Identifier Name Description
transcript