WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R57.1c.1 Sequence Name  R57.1c.1
Length (nt)  2309   Chromosome Location  X: 302741-308258
Chromosome . Primary Identifier  X Chromosome Location . Start  302741
Chromosome Location . End  308258 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R57.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020082 gcp-2.1 R57.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R57.1c R57.1c 2256   X: 302767-302884

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R57.1c.1 302741 308258 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221460   144   X: 302741-302884 Caenorhabditis elegans
Exon221463   315   X: 303656-303970 Caenorhabditis elegans
Exon221466   255   X: 304186-304440 Caenorhabditis elegans
Exon221469   137   X: 304522-304658 Caenorhabditis elegans
Exon221472   112   X: 304976-305087 Caenorhabditis elegans
Exon221475   94   X: 305134-305227 Caenorhabditis elegans
Exon221478   182   X: 305669-305850 Caenorhabditis elegans
Exon221481   145   X: 306177-306321 Caenorhabditis elegans
Exon221483   369   X: 306659-307027 Caenorhabditis elegans
Exon221487   285   X: 307615-307899 Caenorhabditis elegans
Exon221489   127   X: 307944-308070 Caenorhabditis elegans
Exon221490   144   X: 308115-308258 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R57.1c.1 302741 308258 1

1 Sequence

Length
2309

1 Sequence Ontology Term

Identifier Name Description
transcript