WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R04A9.2.1 Sequence Name  R04A9.2.1
Length (nt)  3442   Chromosome Location  X: 372235-376900
Chromosome . Primary Identifier  X Chromosome Location . Start  372235
Chromosome Location . End  376900 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R04A9.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019862 nrde-3 R04A9.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R04A9.2 R04A9.2 3174   X: 372254-372512

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R04A9.2.1 372235 376900 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221523   278   X: 372235-372512 Caenorhabditis elegans
Exon221524   178   X: 372559-372736 Caenorhabditis elegans
Exon221525   280   X: 372786-373065 Caenorhabditis elegans
Exon221526   611   X: 373414-374024 Caenorhabditis elegans
Exon221527   211   X: 374077-374287 Caenorhabditis elegans
Exon221528   329   X: 374496-374824 Caenorhabditis elegans
Exon221529   194   X: 374872-375065 Caenorhabditis elegans
Exon221530   406   X: 375390-375795 Caenorhabditis elegans
Exon221531   352   X: 375842-376193 Caenorhabditis elegans
Exon221532   191   X: 376250-376440 Caenorhabditis elegans
Exon221533   412   X: 376489-376900 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R04A9.2.1 372235 376900 1

1 Sequence

Length
3442

1 Sequence Ontology Term

Identifier Name Description
transcript