WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.5b.2 Sequence Name  F57C12.5b.2
Length (nt)  5120   Chromosome Location  X: 576312-587898
Chromosome . Primary Identifier  X Chromosome Location . Start  576312
Chromosome Location . End  587898 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.5b F57C12.5b 4605   X: 576487-576615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5b.2 576312 587898 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221983   304   X: 576312-576615 Caenorhabditis elegans
Exon221989   178   X: 576667-576844 Caenorhabditis elegans
Exon221994   109   X: 578102-578210 Caenorhabditis elegans
Exon221999   460   X: 578257-578716 Caenorhabditis elegans
Exon222004   133   X: 578958-579090 Caenorhabditis elegans
Exon222009   122   X: 579138-579259 Caenorhabditis elegans
Exon222014   78   X: 579310-579387 Caenorhabditis elegans
Exon222020   156   X: 579988-580143 Caenorhabditis elegans
Exon222024   155   X: 581630-581784 Caenorhabditis elegans
Exon222029   510   X: 582173-582682 Caenorhabditis elegans
Exon222034   228   X: 582738-582965 Caenorhabditis elegans
Exon222039   142   X: 583011-583152 Caenorhabditis elegans
Exon222044   374   X: 583195-583568 Caenorhabditis elegans
Exon222049   235   X: 583636-583870 Caenorhabditis elegans
Exon222054   327   X: 583916-584242 Caenorhabditis elegans
Exon222059   660   X: 584287-584946 Caenorhabditis elegans
Exon222064   257   X: 585620-585876 Caenorhabditis elegans
Exon222069   124   X: 585925-586048 Caenorhabditis elegans
Exon222074   183   X: 586205-586387 Caenorhabditis elegans
Exon222079   114   X: 587370-587483 Caenorhabditis elegans
Exon222083   271   X: 587628-587898 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5b.2 576312 587898 -1

1 Sequence

Length
5120

1 Sequence Ontology Term

Identifier Name Description
transcript