WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F57C12.5b Sequence Name  F57C12.5b
Length (nt)  4605   Chromosome Location  X: 576487-576615
Chromosome . Primary Identifier  X Chromosome Location . Start  576487
Chromosome Location . End  576615
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE29412 MRP-1, isoform b 171.7 1534 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00048851
WBRNAi00015884

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F57C12.5b 576487 576615 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans

20 Locations


Feature . Primary Identifier
Start End Strand
CDS:F57C12.5b 576487 576615 -1
CDS:F57C12.5b 576667 576844 -1
CDS:F57C12.5b 578102 578210 -1
CDS:F57C12.5b 578257 578716 -1
CDS:F57C12.5b 578958 579090 -1
CDS:F57C12.5b 579138 579259 -1
CDS:F57C12.5b 579310 579387 -1
CDS:F57C12.5b 579988 580143 -1
CDS:F57C12.5b 581630 581784 -1
CDS:F57C12.5b 582173 582682 -1
CDS:F57C12.5b 582738 582965 -1
CDS:F57C12.5b 583011 583152 -1
CDS:F57C12.5b 583195 583568 -1
CDS:F57C12.5b 583636 583870 -1
CDS:F57C12.5b 583916 584242 -1
CDS:F57C12.5b 584287 584946 -1
CDS:F57C12.5b 585620 585876 -1
CDS:F57C12.5b 585925 586048 -1
CDS:F57C12.5b 586205 586387 -1
CDS:F57C12.5b 587370 587414 -1

1 Sequence

Length
4605

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F57C12.5b.2 F57C12.5b.2 5120   X: 576312-587898
Transcript:F57C12.5b.1 F57C12.5b.1 4841   X: 576320-587483