WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.4.1 Sequence Name  F57C12.4.1
Length (nt)  4752   Chromosome Location  X: 563711-572701
Chromosome . Primary Identifier  X Chromosome Location . Start  563711
Chromosome Location . End  572701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003408 mrp-2 F57C12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.4 F57C12.4 4578   X: 563827-563955

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.4.1 563711 572701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222019   245   X: 563711-563955 Caenorhabditis elegans
Exon222020   178   X: 564399-564576 Caenorhabditis elegans
Exon222021   109   X: 564619-564727 Caenorhabditis elegans
Exon222022   460   X: 564774-565233 Caenorhabditis elegans
Exon222023   255   X: 565283-565537 Caenorhabditis elegans
Exon222024   78   X: 565587-565664 Caenorhabditis elegans
Exon222025   156   X: 566220-566375 Caenorhabditis elegans
Exon222026   155   X: 566424-566578 Caenorhabditis elegans
Exon222027   486   X: 566629-567114 Caenorhabditis elegans
Exon222028   228   X: 567760-567987 Caenorhabditis elegans
Exon222029   142   X: 568034-568175 Caenorhabditis elegans
Exon222030   371   X: 568227-568597 Caenorhabditis elegans
Exon222031   562   X: 568645-569206 Caenorhabditis elegans
Exon222032   660   X: 569890-570549 Caenorhabditis elegans
Exon222033   257   X: 570653-570909 Caenorhabditis elegans
Exon222034   124   X: 570955-571078 Caenorhabditis elegans
Exon222035   183   X: 571123-571305 Caenorhabditis elegans
Exon222036   103   X: 572599-572701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.4.1 563711 572701 -1

1 Sequence

Length
4752

1 Sequence Ontology Term

Identifier Name Description
transcript