WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.5c.1 Sequence Name  F57C12.5c.1
Length (nt)  4845   Chromosome Location  X: 576318-587485
Chromosome . Primary Identifier  X Chromosome Location . Start  576318
Chromosome Location . End  587485 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.5c F57C12.5c 4605   X: 576487-576615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5c.1 576318 587485 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222038   298   X: 576318-576615 Caenorhabditis elegans
Exon222044   178   X: 576667-576844 Caenorhabditis elegans
Exon222049   109   X: 578102-578210 Caenorhabditis elegans
Exon222054   460   X: 578257-578716 Caenorhabditis elegans
Exon222059   133   X: 578958-579090 Caenorhabditis elegans
Exon222064   122   X: 579138-579259 Caenorhabditis elegans
Exon222069   78   X: 579310-579387 Caenorhabditis elegans
Exon222075   156   X: 580298-580453 Caenorhabditis elegans
Exon222079   155   X: 581630-581784 Caenorhabditis elegans
Exon222084   510   X: 582173-582682 Caenorhabditis elegans
Exon222089   228   X: 582738-582965 Caenorhabditis elegans
Exon222094   142   X: 583011-583152 Caenorhabditis elegans
Exon222099   374   X: 583195-583568 Caenorhabditis elegans
Exon222104   235   X: 583636-583870 Caenorhabditis elegans
Exon222109   327   X: 583916-584242 Caenorhabditis elegans
Exon222114   660   X: 584287-584946 Caenorhabditis elegans
Exon222119   257   X: 585620-585876 Caenorhabditis elegans
Exon222124   124   X: 585925-586048 Caenorhabditis elegans
Exon222129   183   X: 586205-586387 Caenorhabditis elegans
Exon222134   116   X: 587370-587485 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5c.1 576318 587485 -1

1 Sequence

Length
4845

1 Sequence Ontology Term

Identifier Name Description
transcript