WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.5b.1 Sequence Name  F57C12.5b.1
Length (nt)  4841   Chromosome Location  X: 576320-587483
Chromosome . Primary Identifier  X Chromosome Location . Start  576320
Chromosome Location . End  587483 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.5b F57C12.5b 4605   X: 576487-576615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5b.1 576320 587483 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222039   296   X: 576320-576615 Caenorhabditis elegans
Exon222042   178   X: 576667-576844 Caenorhabditis elegans
Exon222047   109   X: 578102-578210 Caenorhabditis elegans
Exon222052   460   X: 578257-578716 Caenorhabditis elegans
Exon222057   133   X: 578958-579090 Caenorhabditis elegans
Exon222062   122   X: 579138-579259 Caenorhabditis elegans
Exon222067   78   X: 579310-579387 Caenorhabditis elegans
Exon222073   156   X: 579988-580143 Caenorhabditis elegans
Exon222077   155   X: 581630-581784 Caenorhabditis elegans
Exon222082   510   X: 582173-582682 Caenorhabditis elegans
Exon222087   228   X: 582738-582965 Caenorhabditis elegans
Exon222092   142   X: 583011-583152 Caenorhabditis elegans
Exon222097   374   X: 583195-583568 Caenorhabditis elegans
Exon222102   235   X: 583636-583870 Caenorhabditis elegans
Exon222107   327   X: 583916-584242 Caenorhabditis elegans
Exon222112   660   X: 584287-584946 Caenorhabditis elegans
Exon222117   257   X: 585620-585876 Caenorhabditis elegans
Exon222122   124   X: 585925-586048 Caenorhabditis elegans
Exon222127   183   X: 586205-586387 Caenorhabditis elegans
Exon222132   114   X: 587370-587483 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5b.1 576320 587483 -1

1 Sequence

Length
4841

1 Sequence Ontology Term

Identifier Name Description
transcript