WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1a.2 Sequence Name  M6.1a.2
Length (nt)  4016   Chromosome Location  X: 643108-650108
Chromosome . Primary Identifier  X Chromosome Location . Start  643108
Chromosome Location . End  650108 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1a M6.1a 3426   X: 643682-644053

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M6.1a.2 643108 650108 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222168   946   X: 643108-644053 Caenorhabditis elegans
Exon222174   159   X: 644102-644260 Caenorhabditis elegans
Exon222180   168   X: 644309-644476 Caenorhabditis elegans
Exon222186   495   X: 644528-645022 Caenorhabditis elegans
Exon222192   111   X: 645109-645219 Caenorhabditis elegans
Exon222198   164   X: 645469-645632 Caenorhabditis elegans
Exon222205   103   X: 646206-646308 Caenorhabditis elegans
Exon222209   660   X: 646358-647017 Caenorhabditis elegans
Exon222214   92   X: 647287-647378 Caenorhabditis elegans
Exon222219   253   X: 647475-647727 Caenorhabditis elegans
Exon222224   119   X: 647773-647891 Caenorhabditis elegans
Exon222229   200   X: 648351-648550 Caenorhabditis elegans
Exon222234   217   X: 648789-649005 Caenorhabditis elegans
Exon222239   111   X: 649055-649165 Caenorhabditis elegans
Exon222244   136   X: 649372-649507 Caenorhabditis elegans
Exon222252   82   X: 650027-650108 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M6.1a.2 643108 650108 -1

1 Sequence

Length
4016

1 Sequence Ontology Term

Identifier Name Description
transcript