WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1a.1 Sequence Name  M6.1a.1
Length (nt)  4317   Chromosome Location  X: 643108-654904
Chromosome . Primary Identifier  X Chromosome Location . Start  643108
Chromosome Location . End  654904 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1a M6.1a 3426   X: 643682-644053

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1a.1 643108 654904 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222169   946   X: 643108-644053 Caenorhabditis elegans
Exon222173   159   X: 644102-644260 Caenorhabditis elegans
Exon222179   168   X: 644309-644476 Caenorhabditis elegans
Exon222185   495   X: 644528-645022 Caenorhabditis elegans
Exon222191   111   X: 645109-645219 Caenorhabditis elegans
Exon222197   164   X: 645469-645632 Caenorhabditis elegans
Exon222204   103   X: 646206-646308 Caenorhabditis elegans
Exon222208   660   X: 646358-647017 Caenorhabditis elegans
Exon222213   92   X: 647287-647378 Caenorhabditis elegans
Exon222218   253   X: 647475-647727 Caenorhabditis elegans
Exon222223   119   X: 647773-647891 Caenorhabditis elegans
Exon222228   200   X: 648351-648550 Caenorhabditis elegans
Exon222233   217   X: 648789-649005 Caenorhabditis elegans
Exon222238   111   X: 649055-649165 Caenorhabditis elegans
Exon222243   136   X: 649372-649507 Caenorhabditis elegans
Exon222249   80   X: 650027-650106 Caenorhabditis elegans
Exon222255   85   X: 652049-652133 Caenorhabditis elegans
Exon222257   103   X: 652980-653082 Caenorhabditis elegans
Exon222260   115   X: 654790-654904 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1a.1 643108 654904 -1

1 Sequence

Length
4317

1 Sequence Ontology Term

Identifier Name Description
transcript