WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1a.2 Sequence Name  M6.1a.2
Length (nt)  4016   Chromosome Location  X: 643108-650108
Chromosome . Primary Identifier  X Chromosome Location . Start  643108
Chromosome Location . End  650108 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1a M6.1a 3426   X: 643682-644053

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M6.1a.2 643108 650108 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222222   946   X: 643108-644053 Caenorhabditis elegans
Exon222228   159   X: 644102-644260 Caenorhabditis elegans
Exon222234   168   X: 644309-644476 Caenorhabditis elegans
Exon222240   495   X: 644528-645022 Caenorhabditis elegans
Exon222246   111   X: 645109-645219 Caenorhabditis elegans
Exon222252   164   X: 645469-645632 Caenorhabditis elegans
Exon222259   103   X: 646206-646308 Caenorhabditis elegans
Exon222263   660   X: 646358-647017 Caenorhabditis elegans
Exon222268   92   X: 647287-647378 Caenorhabditis elegans
Exon222273   253   X: 647475-647727 Caenorhabditis elegans
Exon222278   119   X: 647773-647891 Caenorhabditis elegans
Exon222283   200   X: 648351-648550 Caenorhabditis elegans
Exon222288   217   X: 648789-649005 Caenorhabditis elegans
Exon222293   111   X: 649055-649165 Caenorhabditis elegans
Exon222298   136   X: 649372-649507 Caenorhabditis elegans
Exon222306   82   X: 650027-650108 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M6.1a.2 643108 650108 -1

1 Sequence

Length
4016

1 Sequence Ontology Term

Identifier Name Description
transcript