WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1a.1 Sequence Name  M6.1a.1
Length (nt)  4317   Chromosome Location  X: 643108-654904
Chromosome . Primary Identifier  X Chromosome Location . Start  643108
Chromosome Location . End  654904 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1a M6.1a 3426   X: 643682-644053

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1a.1 643108 654904 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222223   946   X: 643108-644053 Caenorhabditis elegans
Exon222227   159   X: 644102-644260 Caenorhabditis elegans
Exon222233   168   X: 644309-644476 Caenorhabditis elegans
Exon222239   495   X: 644528-645022 Caenorhabditis elegans
Exon222245   111   X: 645109-645219 Caenorhabditis elegans
Exon222251   164   X: 645469-645632 Caenorhabditis elegans
Exon222258   103   X: 646206-646308 Caenorhabditis elegans
Exon222262   660   X: 646358-647017 Caenorhabditis elegans
Exon222267   92   X: 647287-647378 Caenorhabditis elegans
Exon222272   253   X: 647475-647727 Caenorhabditis elegans
Exon222277   119   X: 647773-647891 Caenorhabditis elegans
Exon222282   200   X: 648351-648550 Caenorhabditis elegans
Exon222287   217   X: 648789-649005 Caenorhabditis elegans
Exon222292   111   X: 649055-649165 Caenorhabditis elegans
Exon222297   136   X: 649372-649507 Caenorhabditis elegans
Exon222303   80   X: 650027-650106 Caenorhabditis elegans
Exon222309   85   X: 652049-652133 Caenorhabditis elegans
Exon222311   103   X: 652980-653082 Caenorhabditis elegans
Exon222314   115   X: 654790-654904 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1a.1 643108 654904 -1

1 Sequence

Length
4317

1 Sequence Ontology Term

Identifier Name Description
transcript