WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E10.2b.1 Sequence Name  C09E10.2b.1
Length (nt)  3734   Chromosome Location  X: 983903-991456
Chromosome . Primary Identifier  X Chromosome Location . Start  983903
Chromosome Location . End  991456 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E10.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000958 dgk-1 C09E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E10.2b C09E10.2b 2859   X: 984635-984838

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C09E10.2b.1 983903 991456 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223270   936   X: 983903-984838 Caenorhabditis elegans
Exon223276   99   X: 985192-985290 Caenorhabditis elegans
Exon223281   84   X: 985338-985421 Caenorhabditis elegans
Exon223286   147   X: 985827-985973 Caenorhabditis elegans
Exon223291   126   X: 986020-986145 Caenorhabditis elegans
Exon223296   333   X: 986190-986522 Caenorhabditis elegans
Exon223301   410   X: 987240-987649 Caenorhabditis elegans
Exon223306   148   X: 987701-987848 Caenorhabditis elegans
Exon223311   344   X: 988216-988559 Caenorhabditis elegans
Exon223314   124   X: 988609-988732 Caenorhabditis elegans
Exon223317   119   X: 988933-989051 Caenorhabditis elegans
Exon223321   160   X: 989481-989640 Caenorhabditis elegans
Exon223326   132   X: 989686-989817 Caenorhabditis elegans
Exon223331   89   X: 990314-990402 Caenorhabditis elegans
Exon223336   183   X: 990456-990638 Caenorhabditis elegans
Exon223341   157   X: 991079-991235 Caenorhabditis elegans
Exon223346   143   X: 991314-991456 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C09E10.2b.1 983903 991456 -1

1 Sequence

Length
3734

1 Sequence Ontology Term

Identifier Name Description
transcript