WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E10.2a.1 Sequence Name  C09E10.2a.1
Length (nt)  3726   Chromosome Location  X: 983905-991456
Chromosome . Primary Identifier  X Chromosome Location . Start  983905
Chromosome Location . End  991456 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E10.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000958 dgk-1 C09E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E10.2a C09E10.2a 2853   X: 984635-984838

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C09E10.2a.1 983905 991456 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223271   934   X: 983905-984838 Caenorhabditis elegans
Exon223275   99   X: 985192-985290 Caenorhabditis elegans
Exon223280   84   X: 985338-985421 Caenorhabditis elegans
Exon223285   147   X: 985827-985973 Caenorhabditis elegans
Exon223290   126   X: 986020-986145 Caenorhabditis elegans
Exon223295   333   X: 986190-986522 Caenorhabditis elegans
Exon223300   410   X: 987240-987649 Caenorhabditis elegans
Exon223305   148   X: 987701-987848 Caenorhabditis elegans
Exon223310   344   X: 988216-988559 Caenorhabditis elegans
Exon223313   124   X: 988609-988732 Caenorhabditis elegans
Exon223316   119   X: 988933-989051 Caenorhabditis elegans
Exon223323   154   X: 989487-989640 Caenorhabditis elegans
Exon223325   132   X: 989686-989817 Caenorhabditis elegans
Exon223330   89   X: 990314-990402 Caenorhabditis elegans
Exon223335   183   X: 990456-990638 Caenorhabditis elegans
Exon223340   157   X: 991079-991235 Caenorhabditis elegans
Exon223345   143   X: 991314-991456 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C09E10.2a.1 983905 991456 -1

1 Sequence

Length
3726

1 Sequence Ontology Term

Identifier Name Description
transcript