WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A4.8a.1 Sequence Name  F55A4.8a.1
Length (nt)  2072   Chromosome Location  X: 1038536-1046206
Chromosome . Primary Identifier  X Chromosome Location . Start  1038536
Chromosome Location . End  1046206 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A4.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018860 vpat-1 F55A4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A4.8a F55A4.8a 1887   X: 1038692-1038739

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F55A4.8a.1 1038536 1046206 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223409   204   X: 1038536-1038739 Caenorhabditis elegans
Exon223411   94   X: 1038809-1038902 Caenorhabditis elegans
Exon223414   75   X: 1038957-1039031 Caenorhabditis elegans
Exon223418   96   X: 1039755-1039850 Caenorhabditis elegans
Exon223420   197   X: 1039900-1040096 Caenorhabditis elegans
Exon223423   140   X: 1040157-1040296 Caenorhabditis elegans
Exon223426   160   X: 1040565-1040724 Caenorhabditis elegans
Exon223429   148   X: 1040772-1040919 Caenorhabditis elegans
Exon223432   74   X: 1041059-1041132 Caenorhabditis elegans
Exon223435   219   X: 1041187-1041405 Caenorhabditis elegans
Exon223438   40   X: 1041453-1041492 Caenorhabditis elegans
Exon223441   159   X: 1041688-1041846 Caenorhabditis elegans
Exon223446   86   X: 1044546-1044631 Caenorhabditis elegans
Exon223447   85   X: 1045454-1045538 Caenorhabditis elegans
Exon223448   74   X: 1045597-1045670 Caenorhabditis elegans
Exon223449   120   X: 1045943-1046062 Caenorhabditis elegans
Exon223450   101   X: 1046106-1046206 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F55A4.8a.1 1038536 1046206 -1

1 Sequence

Length
2072

1 Sequence Ontology Term

Identifier Name Description
transcript