WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E7.1a.1 Sequence Name  F49E7.1a.1
Length (nt)  3424   Chromosome Location  X: 1097152-1103320
Chromosome . Primary Identifier  X Chromosome Location . Start  1097152
Chromosome Location . End  1103320 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E7.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004377 rme-6 F49E7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E7.1a F49E7.1a 3282   X: 1097156-1097257

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E7.1a.1 1097152 1103320 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223528   106   X: 1097152-1097257 Caenorhabditis elegans
Exon223530   87   X: 1097313-1097399 Caenorhabditis elegans
Exon223531   98   X: 1097444-1097541 Caenorhabditis elegans
Exon223533   103   X: 1097899-1098001 Caenorhabditis elegans
Exon223535   303   X: 1098045-1098347 Caenorhabditis elegans
Exon223537   109   X: 1098643-1098751 Caenorhabditis elegans
Exon223539   317   X: 1098804-1099120 Caenorhabditis elegans
Exon223542   156   X: 1099169-1099324 Caenorhabditis elegans
Exon223545   169   X: 1099654-1099822 Caenorhabditis elegans
Exon223549   435   X: 1099871-1100305 Caenorhabditis elegans
Exon223552   292   X: 1100618-1100909 Caenorhabditis elegans
Exon223556   228   X: 1100956-1101183 Caenorhabditis elegans
Exon223560   135   X: 1101472-1101606 Caenorhabditis elegans
Exon223564   226   X: 1101658-1101883 Caenorhabditis elegans
Exon223568   116   X: 1101931-1102046 Caenorhabditis elegans
Exon223572   73   X: 1102501-1102573 Caenorhabditis elegans
Exon223576   198   X: 1102649-1102846 Caenorhabditis elegans
Exon223582   273   X: 1103048-1103320 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E7.1a.1 1097152 1103320 1

1 Sequence

Length
3424

1 Sequence Ontology Term

Identifier Name Description
transcript