WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13G4.3.2 Sequence Name  T13G4.3.2
Length (nt)  4493   Chromosome Location  X: 1162207-1177174
Chromosome . Primary Identifier  X Chromosome Location . Start  1162207
Chromosome Location . End  1177174 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13G4.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020490 tmc-1 T13G4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13G4.3 T13G4.3 3858   X: 1163233-1163313

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T13G4.3.2 1162207 1177174 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223711   126   X: 1162207-1162332 Caenorhabditis elegans
Exon223712   161   X: 1163153-1163313 Caenorhabditis elegans
Exon223715   74   X: 1164719-1164792 Caenorhabditis elegans
Exon223717   168   X: 1167925-1168092 Caenorhabditis elegans
Exon223719   158   X: 1168150-1168307 Caenorhabditis elegans
Exon223721   107   X: 1168355-1168461 Caenorhabditis elegans
Exon223723   117   X: 1169167-1169283 Caenorhabditis elegans
Exon223725   146   X: 1169382-1169527 Caenorhabditis elegans
Exon223727   151   X: 1169579-1169729 Caenorhabditis elegans
Exon223729   65   X: 1170019-1170083 Caenorhabditis elegans
Exon223731   225   X: 1170135-1170359 Caenorhabditis elegans
Exon223733   142   X: 1170413-1170554 Caenorhabditis elegans
Exon223735   132   X: 1170928-1171059 Caenorhabditis elegans
Exon223737   168   X: 1171109-1171276 Caenorhabditis elegans
Exon223739   202   X: 1171810-1172011 Caenorhabditis elegans
Exon223741   412   X: 1172370-1172781 Caenorhabditis elegans
Exon223743   111   X: 1172857-1172967 Caenorhabditis elegans
Exon223745   126   X: 1173015-1173140 Caenorhabditis elegans
Exon223747   79   X: 1173186-1173264 Caenorhabditis elegans
Exon223749   147   X: 1173359-1173505 Caenorhabditis elegans
Exon223751   158   X: 1173585-1173742 Caenorhabditis elegans
Exon223753   89   X: 1174365-1174453 Caenorhabditis elegans
Exon223755   97   X: 1174511-1174607 Caenorhabditis elegans
Exon223757   168   X: 1174886-1175053 Caenorhabditis elegans
Exon223759   118   X: 1175169-1175286 Caenorhabditis elegans
Exon223761   144   X: 1175792-1175935 Caenorhabditis elegans
Exon223763   116   X: 1175978-1176093 Caenorhabditis elegans
Exon223765   586   X: 1176589-1177174 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T13G4.3.2 1162207 1177174 1

1 Sequence

Length
4493

1 Sequence Ontology Term

Identifier Name Description
transcript