WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H3.2a.1 Sequence Name  C46H3.2a.1
Length (nt)  2982   Chromosome Location  X: 1211761-1230758
Chromosome . Primary Identifier  X Chromosome Location . Start  1211761
Chromosome Location . End  1230758 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H3.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016725 C46H3.2 C46H3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H3.2a C46H3.2a 2763   X: 1211968-1212061

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C46H3.2a.1 1211761 1230758 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223815   301   X: 1211761-1212061 Caenorhabditis elegans
Exon223817   78   X: 1212344-1212421 Caenorhabditis elegans
Exon223820   118   X: 1212555-1212672 Caenorhabditis elegans
Exon223823   457   X: 1213050-1213506 Caenorhabditis elegans
Exon223826   302   X: 1214007-1214308 Caenorhabditis elegans
Exon223829   289   X: 1214641-1214929 Caenorhabditis elegans
Exon223833   119   X: 1215274-1215392 Caenorhabditis elegans
Exon223835   89   X: 1217948-1218036 Caenorhabditis elegans
Exon223837   79   X: 1218084-1218162 Caenorhabditis elegans
Exon223839   117   X: 1218411-1218527 Caenorhabditis elegans
Exon223841   154   X: 1218909-1219062 Caenorhabditis elegans
Exon223843   92   X: 1219173-1219264 Caenorhabditis elegans
Exon223845   115   X: 1226238-1226352 Caenorhabditis elegans
Exon223846   117   X: 1228871-1228987 Caenorhabditis elegans
Exon223847   111   X: 1229041-1229151 Caenorhabditis elegans
Exon223848   96   X: 1229427-1229522 Caenorhabditis elegans
Exon223849   146   X: 1229961-1230106 Caenorhabditis elegans
Exon223850   144   X: 1230261-1230404 Caenorhabditis elegans
Exon223851   58   X: 1230701-1230758 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C46H3.2a.1 1211761 1230758 -1

1 Sequence

Length
2982

1 Sequence Ontology Term

Identifier Name Description
transcript