WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:H42K12.1a Sequence Name  H42K12.1a
Length (nt)  1899   Chromosome Location  X: 1321363-1321449
Chromosome . Primary Identifier  X Chromosome Location . Start  1321363
Chromosome Location . End  1321449
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H42K12.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28739 PDK-1, isoform a 71.4 632 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00049558
WBRNAi00092508
WBRNAi00016353
WBRNAi00109208
WBRNAi00109402
WBRNAi00109305
WBRNAi00109596
WBRNAi00109499

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:H42K12.1a 1321363 1321449 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003965 pdk-1 H42K12.1 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:H42K12.1a 1321363 1321449 1
CDS:H42K12.1a 1322173 1322331 1
CDS:H42K12.1a 1324383 1324578 1
CDS:H42K12.1a 1324696 1325028 1
CDS:H42K12.1a 1325075 1325162 1
CDS:H42K12.1a 1325212 1325377 1
CDS:H42K12.1a 1325429 1325670 1
CDS:H42K12.1a 1326079 1326129 1
CDS:H42K12.1a 1326180 1326468 1
CDS:H42K12.1a 1326540 1326707 1
CDS:H42K12.1a 1327374 1327493 1

1 Sequence

Length
1899

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H42K12.1a.1 H42K12.1a.1 2402   X: 1321353-1327986