WormMine: Gene WBGene00023400

• WormBase Gene ID: WBGene00023400
• Gene Name: ZK380.3
• Sequence Name: ZK380.3
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in anchor cell based on RNA-seq studies. Is affected by several genes including glh-4; glh-1; and chd-3 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 3647

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023400

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

61 Allele

• gk963725
• gk964444
• gk964445
• WBVar01757254
• WBVar01757255
• WBVar01693606
• WBVar01600761
• WBVar02123638
• WBVar02122877
• WBVar02123326
• WBVar02121343
• WBVar02123609
• WBVar02121500
• WBVar02120738
• WBVar01824445
• WBVar01824448
• WBVar01824449
• WBVar01824446
• WBVar01824447
• WBVar01824455
• WBVar01824456
• WBVar01824453
• WBVar01824454
• WBVar01824457
• WBVar01824458
• WBVar01824451
• WBVar01824452
• WBVar01824450
• h16032
• gk576308

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023400
• Start: 1638811
• End: 1642457
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_1635728..1638810
• Length (nt): 3083
• Chromosome Location: X: 1635728-1638810
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in daf-16(mgDf50) comparing to in N2 at L1 larva stage.	DESeq v1.20.0 was used to analyze differential gene expression. Transcripts with adjusted p-value < 0.05 were considered differentialled expressed.	WBPaper00048971:daf-16(mgDf50)_downregulated_L1
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts enriched in invading anchor cells comparing to in whole animal.	DESeq2v.1.30.1. fold change >= 2, FDR < 0.05	WBPaper00065258:anchor-cell_enriched
	Transcripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4)let-418(RNAi) animals, comparing to in N2 animals injected with gfp control RNAi vector.	DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively.	WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023400
• Start: 1638811
• End: 1642457
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 3647

1 Sequence Ontology Term