WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49H12.1a.1 Sequence Name  F49H12.1a.1
Length (nt)  1718   Chromosome Location  X: 2089704-2093253
Chromosome . Primary Identifier  X Chromosome Location . Start  2089704
Chromosome Location . End  2093253 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49H12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003087 lsy-2 F49H12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49H12.1a F49H12.1a 1098   X: 2089800-2089826

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49H12.1a.1 2089704 2093253 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225048   123   X: 2089704-2089826 Caenorhabditis elegans
Exon225049   141   X: 2090005-2090145 Caenorhabditis elegans
Exon225051   106   X: 2090197-2090302 Caenorhabditis elegans
Exon225053   157   X: 2090355-2090511 Caenorhabditis elegans
Exon225055   84   X: 2090927-2091010 Caenorhabditis elegans
Exon225057   96   X: 2091062-2091157 Caenorhabditis elegans
Exon225059   177   X: 2091217-2091393 Caenorhabditis elegans
Exon225061   109   X: 2092263-2092371 Caenorhabditis elegans
Exon225063   96   X: 2092473-2092568 Caenorhabditis elegans
Exon225065   629   X: 2092625-2093253 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49H12.1a.1 2089704 2093253 1

1 Sequence

Length
1718

1 Sequence Ontology Term

Identifier Name Description
transcript