WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F49H12.1a Sequence Name  F49H12.1a
Length (nt)  1098   Chromosome Location  X: 2089800-2089826
Chromosome . Primary Identifier  X Chromosome Location . Start  2089800
Chromosome Location . End  2089826
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49H12.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28437 LSY-2, isoform a 42.3 365 Caenorhabditis elegans
 

Other

21 RNAi

WormBase ID
WBRNAi00047885
WBRNAi00027354
WBRNAi00025561
WBRNAi00072517
WBRNAi00073761
WBRNAi00073760
WBRNAi00073762
WBRNAi00015351
WBRNAi00117526
WBRNAi00091052
WBRNAi00032563
WBRNAi00107188
WBRNAi00117902
WBRNAi00073759
WBRNAi00097997
WBRNAi00073763
WBRNAi00073765
WBRNAi00073764
WBRNAi00064340
WBRNAi00117525
WBRNAi00117524

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F49H12.1a 2089800 2089826 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003087 lsy-2 F49H12.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:F49H12.1a 2089800 2089826 1
CDS:F49H12.1a 2090005 2090145 1
CDS:F49H12.1a 2090197 2090302 1
CDS:F49H12.1a 2090355 2090511 1
CDS:F49H12.1a 2090927 2091010 1
CDS:F49H12.1a 2091062 2091157 1
CDS:F49H12.1a 2091217 2091393 1
CDS:F49H12.1a 2092263 2092371 1
CDS:F49H12.1a 2092473 2092568 1
CDS:F49H12.1a 2092625 2092729 1

1 Sequence

Length
1098

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F49H12.1a.1 F49H12.1a.1 1718   X: 2089704-2093253