WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B1.8a.1 Sequence Name  F53B1.8a.1
Length (nt)  3156   Chromosome Location  X: 2123413-2130241
Chromosome . Primary Identifier  X Chromosome Location . Start  2123413
Chromosome Location . End  2130241 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B1.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018739 F53B1.8 F53B1.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B1.8a F53B1.8a 2406   X: 2124111-2124191

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B1.8a.1 2123413 2130241 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225118   779   X: 2123413-2124191 Caenorhabditis elegans
Exon225120   156   X: 2125013-2125168 Caenorhabditis elegans
Exon225122   321   X: 2125217-2125537 Caenorhabditis elegans
Exon225126   190   X: 2125878-2126067 Caenorhabditis elegans
Exon225128   445   X: 2126120-2126564 Caenorhabditis elegans
Exon225130   251   X: 2127033-2127283 Caenorhabditis elegans
Exon225132   322   X: 2127334-2127655 Caenorhabditis elegans
Exon225134   292   X: 2127817-2128108 Caenorhabditis elegans
Exon225137   150   X: 2128535-2128684 Caenorhabditis elegans
Exon225140   82   X: 2129770-2129851 Caenorhabditis elegans
Exon225141   168   X: 2130074-2130241 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B1.8a.1 2123413 2130241 -1

1 Sequence

Length
3156

1 Sequence Ontology Term

Identifier Name Description
transcript