WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D1.1d.1 Sequence Name  T07D1.1d.1
Length (nt)  1998   Chromosome Location  X: 2420462-2426976
Chromosome . Primary Identifier  X Chromosome Location . Start  2420462
Chromosome Location . End  2426976 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D1.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D1.1d T07D1.1d 1998   X: 2420462-2420629

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1d.1 2420462 2426976 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225714   168   X: 2420462-2420629 Caenorhabditis elegans
Exon225719   138   X: 2421322-2421459 Caenorhabditis elegans
Exon225723   99   X: 2421516-2421614 Caenorhabditis elegans
Exon225727   270   X: 2421662-2421931 Caenorhabditis elegans
Exon225731   147   X: 2421992-2422138 Caenorhabditis elegans
Exon225735   147   X: 2422184-2422330 Caenorhabditis elegans
Exon225739   130   X: 2422381-2422510 Caenorhabditis elegans
Exon225742   115   X: 2422560-2422674 Caenorhabditis elegans
Exon225745   103   X: 2422719-2422821 Caenorhabditis elegans
Exon225748   106   X: 2423575-2423680 Caenorhabditis elegans
Exon225752   116   X: 2423957-2424072 Caenorhabditis elegans
Exon225756   169   X: 2424127-2424295 Caenorhabditis elegans
Exon225760   149   X: 2426577-2426725 Caenorhabditis elegans
Exon225761   141   X: 2426836-2426976 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1d.1 2420462 2426976 -1

1 Sequence

Length
1998

1 Sequence Ontology Term

Identifier Name Description
transcript