WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D1.1c.1 Sequence Name  T07D1.1c.1
Length (nt)  1737   Chromosome Location  X: 2420462-2427455
Chromosome . Primary Identifier  X Chromosome Location . Start  2420462
Chromosome Location . End  2427455 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D1.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D1.1c T07D1.1c 1737   X: 2420462-2420629

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1c.1 2420462 2427455 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225715   168   X: 2420462-2420629 Caenorhabditis elegans
Exon225718   138   X: 2421322-2421459 Caenorhabditis elegans
Exon225722   99   X: 2421516-2421614 Caenorhabditis elegans
Exon225726   270   X: 2421662-2421931 Caenorhabditis elegans
Exon225730   147   X: 2421992-2422138 Caenorhabditis elegans
Exon225734   147   X: 2422184-2422330 Caenorhabditis elegans
Exon225738   130   X: 2422381-2422510 Caenorhabditis elegans
Exon225741   115   X: 2422560-2422674 Caenorhabditis elegans
Exon225744   103   X: 2422719-2422821 Caenorhabditis elegans
Exon225747   106   X: 2423575-2423680 Caenorhabditis elegans
Exon225751   116   X: 2423957-2424072 Caenorhabditis elegans
Exon225755   169   X: 2424127-2424295 Caenorhabditis elegans
Exon225764   29   X: 2427427-2427455 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1c.1 2420462 2427455 -1

1 Sequence

Length
1737

1 Sequence Ontology Term

Identifier Name Description
transcript